HeatGeneList

1 - Select a dataset

2 - Load your data (optional)

Upload a tab delimited text file of at least one columns. First column should contain gene name (i.e. HUGO symbols), Other columns will be ignore. Case should not matter. Maximum size: 10MB.

First lines of your file should look like this:

geneID
MBD2
CLDN6
CDKN1A
NTN1
UNC5B

You can download an example file . It is a somewhat random human gene list.

Upload your gene list

Use the example file

Choose a file:

Browse...

The expression file contains a header.

The example file is a Human gene list. Please select only human datasets.

Name of your experiment:

3 - Plot customization

Highlight my gene list in the heatmap.

Subset for cell type (empty to select all):

Subset for knock-out gene (empty to select all):

Subset for cell type (empty to select all):

Subset for knock-out gene (empty to select all):

Uploaded experiment correlation correction:

Maximum expected correlation value for linear scaling correction:

Distance calculation:

Clustering method:

Label size:

Automatic

Adjust manually

Sample name size:

Sample name margin:

Show dendrogram(s)?

Show labels?

Colour 1:

Value 1:

Colour 2:

Value 2:

Colour 3:

Value 3:

Colour 4:

Value 4:

Add guide line

Save as tab delimited .txt

Save as png Save as pdf Save as svg Export data as tab delimited .txt

Save as png Save as pdf Save as svg

Save as png Save as pdf Save as svg Export data as tab delimited .txt

Save as tab delimited .txt

HeatGeneLits

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